mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCCGGTCATTTTGTTTATAGA TGTGAACATCTTGACCAAGGGGA GCATTCAAATCCCCGGTCATTTTGTTTATAGAACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATGTTTTATATGTTTCTGACCCTTGTGAACATCTTGACCAAGGGGAAGAAGGTG CACGAGGTTTTCTTGTAATGATTTTGGGACTATGCACAGAGAGGATATCGTCAGCTGAGGTGGAGACAATGATTCTGACAAAGCAGTACCGCTGCATACATTCAGCAAACTGTCAATGCACGAAAGGACATCTGAGTGAAGAACTGATATTCCTAGTATTCCAGCAATTGAACTGGAACCCTAAATTGATTGCTGCTCTGTCCTGTGTATGCAAATGGTTTGATGATCTTGCTAAGCGGATACTATGGAAGGAATTTTGCCGAACTAGAGCACCAAAGATGATGATTGATCTGCAATCTAGTGGAAGTCACAGTGTTGATGGGAACTGGAGGGCACTTGGAAAGCTGCTTATATATTGTTCAGGATGTACCAAGGGTGGTCTTTTCAACAGCATTCAAATCCCCGGTCATTTTGTTTATAGAACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATGTTTTATATGTTTCTGACCCTTGTGAACATCTTGACCAAGGGGAAGAAGGTGATGTGGGATTTTTCCGCGGGGTCTTCAAATCATTCTCAATGT 4 2 5' arm Carica_papaya mirnest 100 100 -35.2 ((.(((...((((((((((...(((((((((.....((((.....((((((......(((((..((((((((......)))))..))).)))))..))))))..)))).)))))))))...)))))..))))).))).)). (-35.2)