mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCTTCTTCCTCTTCCC AGAGAGAGAGAGAGAGAGGCA GAGAGAGAGAGAGAGAGAGGCAGGCAGTTGATTTGATTTCATGGTGGATACTCATCCTCTTCTTCTTCCTCTTCCCATCATCCAT ACAAAAGAAAAAAGTTTAGAGAGAGAGAGAGAGAGAGGCAGGCAGTTGATTTGATTTCATGGTGGATACTCATCCTCTTCTTCTTCCTCTTCCCATCATCCATGCTCCTCTTCCACTTGTATTCCTCCGCCGCTCATGCTGTTGAAGCCACCGTCCATAAGCTAGGTGACTTCCTCATCACCGGATGGCAGCGGCGGCACCTACACCAATGCCGGAGTGAATCTCGCAACCACCATATTCGCCGGACTTGTAATCGCTGCTGCTATGTATTCCACCTCTAGGGGACGACTCAGATCACCATGGTCGCGTAAGAAAAGAAAACATGCACTCACTCCTCAACAGTGGAAAAGTTTGTTTACACCAGAAGGAAAACTTCGAGATGGTGTTAAATTTCTGAAAAAAGTTCGCAGAGGGGGAGTTGATACAAGTATTAGGTCAGAGGTTTGGCCTTTCCTAATTGCAGTTTATGAACTAAACAGATCCAAAGAAGAAAGGGATAAATTAAAAACTCACGGGAGAAAGAAATACCAAAAATTGCAGACGCAATGCATGAAACTTGTGAGGTGCAGCGATAAGAGCTATAATATGAAAGAAACTGGTGAAACCATCAGCAATGAGGACAGTGATCCATTCAATCCAGGCATGGACTCTACCGAATCAGAAGATGTTGTGAGTGCTAAGGAGTCACTTTCTAGTGAGGAAATAAATTCATCTCCTGGATGTTCAGATAATCGC 5 0 3' arm Carthamus_tinctorius mirnest 100 zma-MIR166a 0.001 -18.9 ..(((((.(((((.((((((.((....(((...((....))...)))...))...)))))).))))).)))))............ (-18.9)