mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTTGTTGCAGGATCCATCCC GATGGAAATGTCAACAAGGTC CACCGAAATCGTGATGGAAATGTCAACAAGGTCGAAGCTCTGAAGCGTTACAAATTTAGCTTAGCTTTTGAAAATTCCAATGGGGAAGACTATGTTACCGAGAAGTTCTTTCAGTCCCTTGTTGCAGGATCCATCCCTGTCGTTGT TGTGAGTTGAATGCAGTTTGGCTTTGAGAATAAGAAGGCTGATGCTGCGTTTGGGTTGCCTAATGGAGCTAATACAGCTGGCGTTCTTCGGTCGATGGAATCAGCTCAATACTATGCTGAGAACAACATTGCTATGGCACGACGGTGGAAAAGGGTACAACATCATTATGACAACCAGTCTCTCCTCGGATGTCCCTGTTGGCTATTTTTCATGGGCAGAGTATGATTTAATGGCCCCTGTTCAGCCGAAAACTGAGAAAGCGTTGGCAGCTGCATTCATTTCAAACTGTGCTGCTCGCAATTTCCGCTTACAAGCCCTTGAAGGACTTGAAAAGTCAAACATCAAGATTGATTCTTATGGTGGTTGTCACCGAAATCGTGATGGAAATGTCAACAAGGTCGAAGCTCTGAAGCGTTACAAATTTAGCTTAGCTTTTGAAAATTCCAATGGGGAAGACTATGTTACCGAGAAGTTCTTTCAGTCCCTTGTTGCAGGATCCATCCCTGTCGTTGTTGGTGCTCCAAATATTCAAGATTTTGCTCCTGCACCTGGTTCCATTTTACATATCAAGGAGCTAAAAGATATCAACTCAGTTGCCCAGACCATGAAACATCTTGCTGAGAATCCTGCTGCCTACAACGAATCACTAAGATGGAAATATGATGGGCTTTCTGATTCTTTCAAGGCCCTTGTAGATATGGCCGCTGTTCATTCATCTTGCCGGTTATGCATCTTTCTTGCAACAAGAATCCGTGAGAAAGAAGAGAAAAGTTCTGTATTTGCAAAACGACCTTGCAAATGCAGAAAGGGATCC 4 2 3' arm Carthamus_tinctorius mirnest 100 100 -32.6 ((.(((......((((((..((.((((((((..((((((...((((............))))))))))(((((.((((.....))))((((...((....)).)))).)))))...))))))))))...))))))....))).)). (-32.6)