mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA GTAATGGTGAGGGTGAATTGT GTCGGTCATCATCATCATCATCATCATCTTCTTCTTCTTTCTTCTCTCTGTTTCTGTATCTGTATCTATCAACAGATATTAAGTTTGATTATTATTGTAAGTAGGTGGTAATGGTGAGGGTGAATTGTGA GCGGGGGTTCTCACTCTGCCTTGCCTTTTCTATTACTATAAATTATTCATTAATGCTCTCAATTCCCAATTCCAATTCATTCATTACTCTTATAAATATATATATATATATACACACTAATTAATACTGTCGGTCATCATCATCATCATCATCATCTTCTTCTTCTTTCTTCTCTCTGTTTCTGTATCTGTATCTATCAACAGATATTAAGTTTGATTATTATTGTAAGTAGGTGGTAATGGTGAGGGTGAATTGTGATCCAACTCCGCCTATCTCTCCTAAATTATCTTTCCAAAGTGATTCTGGGCAGATTTTCAACCATCAACAACATGGTCTTATAAATATGCCTTCCAATTCCTTATCCCCAGTTGTTAAATTGGGGAAGATATTGCATCATCAAACCTCTGTTTGGTCAGACTCAGAGATGACACCGCGTTTTAGACCATTCTCTTCCATTCCTTCAGATGCCACACCAAATACAAAGTCACCTGTGGAACTGGTTGAAGAGGTAACCTCCATTGAAATAGAAATACTTCATTTGGAACGCTATCTGCTTTCACTCTATCGCACATCTTTTGAGCACCATCGTCACAGTACAGAAACGCCTGCACTGTGTAAAACAGAATCACATGTTGCTGCTGATCAGTCTTGTGACAAAGTGAAGGCTGATGCTTGGTTAAAATGTAAAGATTCTCCTGCGCAGGAGAGAATTTCTGCTTCAAATCATGAAATGAGGTCTTCCACTCCAAAGACAT 5 0 5' arm Carthamus_tinctorius mirnest 100 100 -28.2 ........(((((.(((((((.(((((((.(((.........((...((......((((((((........))))))))..))...))..........))).))))))).))))))).)))))....... (-28.2)