mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCC ATGAATATGATGATGTTGCAAC ACATCCCTTTCGAATGAATATGATGATGTTGCAACTTCTCCTCTAGTCTTCATTCGTTTATCAGCTTTCTCCAATTCCAAGCATGGCCAGTTCGTTGTGGATGCCGCAATTAAGATTTGCTTCTCCACAAGTGGAACCTAAGTTTTGCCGGAGTCATGTACGATTATATGGTGTTCATCATCATCATCATCATCCTCAATCGTCT TGGAACTGTTGCATGCACGCCATATCCATCTCACTAGACTTTTCTGAACATCCCTTTCGAATGAATATGATGATGTTGCAACTTCTCCTCTAGTCTTCATTCGTTTATCAGCTTTCTCCAATTCCAAGCATGGCCAGTTCGTTGTGGATGCCGCAATTAAGATTTGCTTCTCCACAAGTGGAACCTAAGTTTTGCCGGAGTCATGTACGATTATATGGTGTTCATCATCATCATCATCATCCTCAATCGTCTGTCGGATTTCGCAGACTCAATAGCTTCAAGGTACTGTGTCGCAATTCCGATGGCCAGAAAAGCAACAACCAACCAGAACGAACTGGAATCCAACTTTACAGCGAGATCGAGAGGTTACTCACAGAGACCGTGAGGCAATCTCAAGATGGGTGGGGTGGTTCAAGAGATTGGCATGAAGTTGAGGGAGCCTGGGTATTGAAACCAAAAAATTCAAAGCCAACATCTGTTGTGCATTTTGTTGGTGGCATTTTTGTTGGGGCAGCCCCTCAGCTCACTTACCGCTTATTTCTGGAGCGCCTTTCAGAGAAGGGTGTATTGGTGGTAGCAACGCCTTATGCTAGTGGCTTTGATCACTTCTTCATCGCAGACGAAGTTCAGTTTAAATTTGACAGGTGTCTTAGGGCTCTACATGAAACAGTGAAGGATCTTCCATCTTTTGGCATTGGACATTCTCTAGGATCCGTCATCCATCTTTTGATTGGTTCCAGGTATGCTGTGCAGAGGAGTGGTAATGTATATATGGCATTCAACAACAAGGATGCCAGCATGGCTGTCCCGTTGATCTCACCTGTACTTGCGCCAATG 5 1 3' arm Carthamus_tinctorius mirnest 100 100 -38.1 ...........((((((..(((((((((.((.(((....((............((((....((.....((((........(((.(((..((((.(((((((....((((.......))))...)))))))...))))....))).))).))))...)).))))......)).))))).)))))))))..))))..))........ (-38.1)