mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCCTCT AGATGATGATGAACGGTGAGCAAACGATGATAATGAAGGTTGACTATTCAAAGTCAAGAAGAAAGCATTATGGATACCCCCATAAAAGGCTTGCATCTTCTTCTTCTTGTTCTTCATCATCATCATCATCCTCTCAAAAAGGC AGATGATGATGAACGGTGAGCAAACGATGATAATGAAGGTTGACTATTCAAAGTCAAGAAGAAAGCATTATGGATACCCCCATAAAAGGCTTGCATCTTCTTCTTCTTGTTCTTCATCATCATCATCATCCTCTCAAAAAGGCATCATGGGTGCAGAAACACCATTTAAGAACAATTCCTCAGAAATGCAGGAGGTTGTGGATTTGAGTGCCATGTCTTTAGATACCCTCCCAATCACTTCTAATCTCAATCTATCCATTATTAGGGTCTTGGATATCTCCAACAACAATCTCCAGGTAATACCAGAATCATTAGCAGCAAGATTGTTGAATATGGTGGTGTTGGATGTTCATTCAAATCAACTCAAGACTCTACCAAATTCAATTGGATGTTTGTCAAAGCTCAAGACTCTCAATGTTTCTGGAAATCATCTTCAATCCTTCCCAAAAACCATTGAAAATTGCAGATCATTGGAAGATTTAAATGCAAATTTCAATCAGTTGACAACCCTACCTGACACCATCGGATTTGAACTCATCAACCTGAAGAAACTCTCCGTTAACTCCAACAAACTGATCTGCCTACCAACCTCCACCTCCCACCTCACCGACCTCCGCCACCTCGACGTCCGCCTCAACCGCCTCCGCTCCCTCCCTGACGACCTCGAAAACCTAATCAACCTCGAAATCCTCAACGTCAGCCAAAACTTCCACTACNTCCAAACCCTCCCCTACTCCCTCGGCCTCCTCATCTCCCTCGTCGAGCTCGAC 5 1 3' arm Carthamus_tinctorius mirnest 100 100 -39.4 .(((((((((((..((((((..(((((.((....((((.((((((......)))))).((((((((.((((((......))))))...))))...)))))))).))))))).)))))).)))))))))))............. (-39.4)