mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAAAATTTTTGTGTGTCTGATC AGTGATGATTCACATTCATGTCTCTTC TTGCTTTCATCAGCCTGAAGTGATGATTCACATTCATGTCTCTTCTCTGATAAATTCTTGAAGAAAATTTTTGTGTGTCTGATCAGGCCTCTAGAGGGCAG 11 4 3' arm Homo_sapiens mirbase SNORD111 1e-25 hsa-mir-3647 1e-52 -27.86 .(((((((....((((((......(((.((((........(((((...((.....))..))))).......)))).)))...)))))).....))))))). (-27.86)