mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCG GTGTTTGATGAAGATGGGAAA GATTTCGTGTTTGATGAAGATGGGAAATGGATATTGCAGGGATGGAAGGGAAGGATACTGTATGCTAGTTCATGTTGGGTCCCTGCATAGTCCTCGTCATCATCATCATCATCATCGCCA TAAGTTCTGAAGCTGATTAGGGATATGAGGCCCGATATATTCGTTCCGGGAGTCGTTAACGGATGTTACAGTGCTCCGTTCTTCGTGACTCGATTCAGGGAGACCCTTTTCCACTACTCCACTTTGTTCGATATGTTTGATGCCACTCTCGAGCGTGAGAACGAGCACAGGATGAATTTCGAGAAGGAGTTTTATGGGCATGAAGCCATGAACGTGATAGCGTGCGAAGGTGCTGAGCGGGTGGAGAGGTCGGAAACCTACAAGCAGTGGCAGGTTCGAATCTCGAGGGCGGGATTCAAGATGAAACCGTTGAACCAGGAGATCGTTTCGAAATTGAGATGTAAAGTTAGGGGAGGGTATCATAAAGATTTCGTGTTTGATGAAGATGGGAAATGGATATTGCAGGGATGGAAGGGAAGGATACTGTATGCTAGTTCATGTTGGGTCCCTGCATAGTCCTCGTCATCATCATCATCATCATCGCCATCATCATCATCATCGGAAGGTATGATTGCTGGTATTCGTGTGGCCATCGATATCTTGATTGCTTTCAGGTCGACATATATGAATATGTAGTTAAGTAAATGATCTAATAAGAGTATTCATGACTCACCCTAGTATTGTTTAGAAGAGACTGATGATATATAACTTTGGCTGAAACTTTAAGGGAGAATATTTTGTTAGAAGTTTATTTCTGATGTGTGGTATTTATGGAGTTGATTTTTGTAGTTTTCGAAGTTCTTGTTTCATGAAAACAGTCGTTCCACTCTTTGAAGTGGAGGTCATATCTTGACCCCATTTTTTCATATGATACACTGAAAGTTTGTTTGGTTTAAAAAAAAAAAAA 4 2 3' arm Centaurea_maculosa mirnest 100 100 -35.3 ......(((..((((((.(((((((...((((..((((((((((((..((.((....)).....))..)))).......))))))))..))))...)).))))).)))))).)))..... (-35.3)