mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACTCCCTCTGTCCCAAAAG CTTGGACGGAGGGAGTAATG CTAGAATTTGTGTACTCCCTCTGTCCCAAAAGAGGTGTCCACTTTCAAACTACGGGATTGAGATACTCCTTACTCCACCTATAATCAAGGGCAAACTGTAGAAACCCAAAACTGTGATAATTATACATCTCTAGAACTATGCCTTTCTCATCGCGTACATCTCTCTTGGACGGAGGGAGTAATGTATAAGAG ACATCGTCGTCTCTCAAGCTTACCCTCCGATACTCTCCAACTCTTACGCAAAGAGGCAAAAGTTATATGTAGCACTTGTAGTGATGGATTCGTCAGCAAGAGAGGATTTCCCTGCTATTCAGGAGGTTTTGTTGCAATTTCGTGCCGGTGAAATGCATATGGCAGGGAAAACGTGTTGTCGCTGAGCCACGTAAAGGACTTGCTCGCATTGCAAGAGGCGAGTAAGGAGTGGTTCATATTCAATGGCTTGACCGAACCAATGATGTTATCGAAGATGTATCCGAATTTTTATTACATCTATCAGACTCATATAAAGCACATAGTTCTCTTATAACACTTCATCATTTGCGATTTGCTTACAAGTGTCATAAAGGAATGTTGACGGTTTTGATTTATCACCGGATAGCTAGAATTTGTGTACTCCCTCTGTCCCAAAAGAGGTGTCCACTTTCAAACTACGGGATTGAGATACTCCTTACTCCACCTATAATCAAGGGCAAACTGTAGAAACCCAAAACTGTGATAATTATACATCTCTAGAACTATGCCTTTCTCATCGCGTACATCTCTCTTGGACGGAGGGAGTAATGTATAAGAGCAAATAGACGGTGTGCGATGTCTATACAGATGGATGCATCTCCAGACTT 2 1 5' arm Centaurea_solstitialis mirnest MIR1122 0.0007 osa-MIR1862d 0.0006 -44.2 ......((((((((((((((((((((.((.((((((((.............(((.(((.((((........................((((((..(((.(((..........((((.......))))))).))).....))))))))))))).))))))))))).))))))))))))))))...)))))).. (-44.2)