mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTTCT AAGGACGATGGAAAGGATGATG GCGGACATTCATCATCATCATCATCATCTTCTTCCTCTTACCAAAAATTAAGTTTAAAACCAAATGTGGTTGGTATGAGGTCCCTATCTCAGACTGGTCATCAGAAGCTTGTTGATAACCGCCGATCTCTTCGGGTGTTCGCCTTATTTGGAGGAAAGAAGGACGATGGAAAGGATGATGGAAAGGCA GGCGGGGACACACAGAGACTGAACAGAAAGAAAGAAAAATATCCCTTTTTCTATCCTCTCTTCTTCTTCTTCGTCTTCCAAAAACCCTCAAATGGCGTCGGCGAGTGCTTTCACAGCTCAGCTTTCGAGCTTTAATGGCGGACATTCATCATCATCATCATCATCTTCTTCCTCTTACCAAAAATTAAGTTTAAAACCAAATGTGGTTGGTATGAGGTCCCTATCTCAGACTGGTCATCAGAAGCTTGTTGATAACCGCCGATCTCTTCGGGTGTTCGCCTTATTTGGAGGAAAGAAGGACGATGGAAAGGATGATGGAAAGGCAGGAGTTTTTGGAAACATGCAAAATCTGTACGAGACGGTAAAGAAAGCACAAATGGTTGTCCAGGTTGAGGCAGTACGTGTGCAAAAAGAACTCGCTGTAGCTGAGTTTGATGGTTATTGTGAAGGTGAGCTAGTAAAGGTCACATTGTCTGGGAATCAGCAACCCGTAAGAACAGAGATTACTGAAGCTGCAATGGAATTGGGGTCGGAGAAACTCTCACTTCTGATTACTGAAGCTTATAGGGATGCCCATCAAAAAAGTGTCCAGGCAATGAAAGCGCGGATGGGCGATCTTGCACAGAGCTTAGGAATGCCACAAGGCCTGGGTGACCAGTTCAAGCAATGATCTATGCCTCTTTCACACTCTTCCTCCAAAACCTGCAGTTTTGTAGACCAAATGTTTGTTATCAGAAGCAAGTTTATAGGGACCAACAATGAATCATGAATGTTTAGATATGGAAGAAATGAAAAGGAATGAGATTTCTTCTTTGAGCTGTTGTTTGT 5 1 5' arm Centaurea_solstitialis mirnest 100 100 -48.4 .......(((((((((....(((((.(((((((..((((.(((((...((((..((.(((((....)))))(((.((((((....)))))).)))(((.(((((.......))))).))).((((.....)))).)).....))))))))))))))))))))..)))))....)))))))))...... (-48.4)