mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGAATTTTTTGGGGGAACTA GTGTCTCTCGTAGAAGTCTCAA TTTAACAGACCCTAACAGGTTAGTGTCTCTCGTAGAAGTCTCAAGAATCATGAAACGAGTAAAAGATGAATTTTTTGGGGGAACTAACGAAGGGTTAGGATTTGT GAGCAACTCTACGACTCTCGCAAGCGATCATCCGTCGCCGTCACTACCACCATCATTCCAACCGGCGCCACCTCTCTCCTCCACTACTTCAACTTCTCCTCCTCCGCCTCTACCTCTAAATCTCAGCTCATCTGCCTCTCATCTTAATTATCTCCCAATCTTGTTTTCGATTATTTCCCCTTTTTATTCTTGCAGTTTCCGATGATCCCTTTACTGATCCAAAACCCTAATCCACCATGGAAGTTGAAGTGAAGCTCCGCCTACCCGATCGTGAAACGCACAAAACCCTAATCTCTCTCCTCTCTCCTTTCCACATCAGAACCCACAACCAACACTGANTTTCGCTCTATAGNGTCGCCGGCCAACTCTCATCCAAACGCGCAGTCCTCCGCATCCGCTTCTACAACGACCAACCCACCACTAAATACGTCATCTCTCTAAAAGCCAAAGCCGTACTCGTAAACGGTGTGAGCAGAGTCGAAGAAGATGAAGAAGAAATCCATCCGTCAATTGGTCAAGAATGTTTAACAGACCCTAACAGGTTAGTGTCTCTCGTAGAAGTCTCAAGAATCATGAAACGAGTAAAAGATGAATTTTTTGGGGGAACTAACGAAGGGTTAGGATTTGTCTGTTTGGGTGGGTTTAAGAATTTGAGGAATGTGTATGAGTGGAAAGGATTGATGCTTGAAGTGGATGAAACAAGT 4 1 3' arm Cichorium_endivia mirnest 100 100 -25.9 ....(((((.((((((..((((((.(((((((.((((.((.......((.......)).........)).)))).))))))))))))).....)))))).))))) (-25.9)