mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCTCCCTCAAGGCTTCAGA TGCTGCTCAGGGGAGAGAAA CTACCTTCATTCTGCTGCTCAGGGGAGAGAAAAGAAGGAGAAAGAAGGGGGTTTCTTTGCTTGTTTCTTACTCTTTCTCTACCCCCTTCATTCTATATCAATCAATCCTCTTCGAATTCTTTTCAATTAGGGTTTCATCGATCTGTTTCTCTCCCTCAAGGCTTCAGAAAAAAAAAA CGGCCGGGGAGACACTCTCATTCATATCCTACCTTCATTCTGCTGCTCAGGGGAGAGAAAAGAAGGAGAAAGAAGGGGGTTTCTTTGCTTGTTTCTTACTCTTTCTCTACCCCCTTCATTCTATATCAATCAATCCTCTTCGAATTCTTTTCAATTAGGGTTTCATCGATCTGTTTCTCTCCCTCAAGGCTTCAGAAAAAAAAAATTCAATAATTAAGGATGATGACATCAAAAACAATAAGGAGAAGACTCCATCATGGGGATGTTGATGGTAAAAAGCACGAGCATTTAGTAGGTGCAGATTTAGACGACCTACAAGAGCCTTTACTAGGGAAAAATGATGACTATAAAGCTAAGCAGTTGGAGGTGCAAAAGCGGGAAGGTAATTTGTATGATGCAAAAAGTAAAGAGCGCCTCCACTGGACGTTTCTATTCTCTAACATAATTTCCGAATGGGCACAATGGTTAGCAAGAGTACTACTCGGATCCGGATCGTTTATTGTACGCGCCTTGACTTTACCTTCAACGGTAGGAAGTGTACCGACAAAGAAGCTTCTTCCGTCATCACTTACTCCGTTACAGGAATCAAGACTCANAGCTTTGCAGAANAGATTGGAGGTCCCGTTTGATGGTTCTTCTTTGGAGCACCAAGATGCACTAAGGACGTTATGGAGGTCAGCGTATCCNAACCGAGATCTCCCAGGACTTAAATCGGAGGCTTGGAAAGATATGGGGTGGCA 4 1 3' arm Artemisia_annua mirnest 100 100 -47.2 .........(((((..(((..(((((((((((...((.((((.(((((((((..........((.....)).........))))))))).))))..(((.((.((((((....(((.....)))....))))))..)).))))).)))))))))))...)))..)))))........ (-47.2)