mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCAATAGATTGGACTACATAC ATGTAGTCCAATGTATTGAAC ACATCTTGATCAAAAGTAATATATGTAGTCCAATGTATTGAACTACTCAACCACATAATCTCACTAGAGATGGTGTGCTAGTACTTCAATAGATTGGACTACATACGTTACACTTCACCAAGACA GACAGCTCTCGAGAGATGGGTATGGGTTTCTCTAGGAGGGACTATGTGCATAGCTAAAAAACAAAATGAATCCTGTCTCTTCCCTCATTATTTCCCTTACCTAGTTTACATCTTGATCAAAAGTAATATATGTAGTCCAATGTATTGAACTACTCAACCACATAATCTCACTAGAGATGGTGTGCTAGTACTTCAATAGATTGGACTACATACGTTACACTTCACCAAGACATTTCTCCAACAACAAAAAAACAACATAAAACCAACTATTCATCCAGAGATTCTCGATAGGTTTTCTTCTTAGATAAAATGGTTGCGGAATGCATGGAACATCTTTGGGGAGAGAAGCAGTAGGAAGGCTAGAACCGAACCGAAGAACATCTTCATTATGTAACCGAAAGCGTCTGATGACTCGCTATCCTCTGAGACACCAGCACTTGGTGGGTTCACCATTGCTTCTGCTGAAGGAAGCGACTCTATCACTGCATCAGCCAAGTCGGTGATGAAGGATGGCGTCAGACCTAGCGCCGGGACACGCCCCCAGTTCTCTATCCCTGACTCCAAAGCTAGCTCCCTGTACTCCATGTCTATCTCTTCAAGCGTCTCAATGTGCTCACTCACAAAACTGACTGGAACGGCTAGTAGACTCTTGACACCATTCTTACCAAGGTCGACAAGAACCTCATCAGTGTATGGCTTCAGCCATTGAACAGGCCCAACACGACTCTGGTAAGCCAAGATATGGTTGTTTTG 2 0 3' arm Brassica_napus mirnest 100 ath-MIR860 1e-16 -44.8 ...(((((.......(((((.(((((((((((((.(((((((.((((....(((((.(((((....))))).)))))..)))).))))))).))))))))))))).))))).......))))).. (-44.8)