mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGACGCGGCCCTGTTGGAGT TCTACAGTGCACGTGTCTCCAG GTGTATTCTACAGTGCACGTGTCTCCAGTGTGGCTCGGAGGCTGGAGACGCGGCCCTGTTGGAGTAA 1 2 3' arm Pan_troglodytes mirbase mir-139 2e-26 lla-mir-139 2e-32 -34.9 ...((((((((((.((.((((((((((((.(.......).)))))))))))))).))).))))))). (-34.90)