mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGATGAAGCACTGTAGCTCA AGGTGCAGTGCTGCATCTCTGG GCGCAGCGCCCTGTCTCCCAGCCTGAGGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTTTTCTGCAGC 3 0 3' arm Pan_troglodytes mirbase mir-143 2e-39 ppa-mir-143 2e-55 -49.94 ..((((.......((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).)))).......))))... (-49.94)