mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGAGTGGAGTGGAGTGGACT TCAGCTTTAATACTCTTCT AAGAGCCGTGGTAGAGTGGAGTGGAGTGGACTGGTACCTTCAGAAGTAGAACGTGGAACTTGCAACTTCCGGGTTCAACCTCCGGGAACTTGCAACATGGAAGTCAGCTTTAATACTCTTCTTTCAACTC GTCTAAATTCCCCAATTTGATTAAAGCATAGACAAATATCCTCACAACCAACACCCATCAAAGTAACGTGGAAAAATCGACCCAGCGAAGAGTCTACAGGGCGTTTAAAGTTTGGTTGGTACGATCTCATAAGCAAAAAACGTAAAAATAAGAGCCGTGGTAGAGTGGAGTGGAGTGGACTGGTACCTTCAGAAGTAGAACGTGGAACTTGCAACTTCCGGGTTCAACCTCCGGGAACTTGCAACATGGAAGTCAGCTTTAATACTCTTCTTTCAACTCCAAAATGGAGTGCTCTATCTATAGCCCCTGGCCATTCACTGAGATTATCTGACATGTTGCTGATCAAAACACAAGCGTATCTTTTGGACTCCATGTTGTGTTTAAACATCTCCATGTAGTAGGGATCATGGAAGAAATGATCAGAGACTAGGATCAAACTTCCTCCATGATTCTTCAGAGGAGCGTCCCTTGACAATAGATGAATGTCATTTAACATTCTGATACGTCTGGAGTCCTTATCCCCTCCGGGAAGAAAGTAGATGCTTGAATCCCACGTCTTGTCACCCAGATACTTGTCTCTCCAAGACCATTTCCTGTACTCATCGACATAAGCCCAGACTGTAATATTATCACTGTAACCTCTCCCCACAAGAGCTGATCTGATTTTCTCGAAGATCTGATCAGGAGAGAGAGAAAGAGGGAATGGGCAATCCATGGCGTCCCACAAGATGACTGCGCTACTCCCTTTGACGAGTCTGATAGGCTCGGA 3 2 5' arm Brassica_napus mirnest 100 100 -32.8 ..(((...(((.((((((...((((((.(((((((.(((...((.((.((((.(((((........))))).)))).)).)).))).)))...........)))).)))))).))))))....))).))) (-32.8)