mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCATATTTGGCA TCGAAATATTAGATGTATCTAGA CCTAAATTGTTGTCGAAATATTAGATGTATCTAGACGCTTTTTAAAAATAGATACATCCATATTTGGCAAATTTGACT GTAAAAGCAATGATCAATTAAACTGTTTGTTCTAATTGTACAACAGGGTCCACATCACCAATAACCATTTTACAAAAACAAATTACTCCCTCCGATCCTAAATTGTTGTCGAAATATTAGATGTATCTAGACGCTTTTTAAAAATAGATACATCCATATTTGGCAAATTTGACTCAAAAATTTAGGATCAGAGGCAGTAATAGACATCAAGAAGCTTGAATAAACAGTTGGGTCCTGATATACAAGGCGGTCTTCCCTGACCCATGCTCACCACCCATATTTTGCGTGAGTCTCTGCCTTGGTGAGTAAGCCCTTGGAACGCCTCTCGGAGAGCTCCATCTCCTTTTGCTTCATGTCATAGAACAGAGACCCGATCTGATGCTTCCTCTTCTGCAACTTCGAGGGCTTTCCCTTCCCCGAAGGAGCGGCCTGGTAACTAGGACCAAAGGCCAACCCTGTGAGCTTGGACTTGTCCTCCCTCGGACGGTTCTTCATCAGTTCTGCCTGGTTCACCTCTAAAACCTCCATCGGCATATCCTTCCTACCTCTCTTCCCTCCTATCCTGCCCGCCTCTGGTGGCAGTACCAGATCGTGCATATGTGGCGCTGGCATTGCTGCCACCTCCGATCTGTACCCACCAGTGTATTCCACTCCAGATGGCGGCGCTGTTTGAATGCTGGTACCCACCAGAGTGCTCTCCGACATACCCATTACCATATCCAGCACCTTGGGTCTACTCCATATGCCGCAA 1 2 3' arm Brachypodium_distachyon mirnest MIR1122 3e-25 bdi-MIR5183 3e-16 -17.2 ..((((((..((((.((((((..((((((((((...............)))))))))).))))))))))))))))... (-17.2)