mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATACTCCCTCCGTCCCATATT CTTGGGACCGAGGGAGTATAT CATTCAACAAAATACTCCCTCCGTCCCATATTAAGTGACGAAATACTACATGTATCTAGACGTTTTTTGGGTATAGATACATCCATATTTGGACAAATTCGAGTCACTTGGGACCGAGGGAGTATATGATTATTC GATATCATAGAAGCATCGTTTCACTATACTCATAAACATTCAACAAAATACTCCCTCCGTCCCATATTAAGTGACGAAATACTACATGTATCTAGACGTTTTTTGGGTATAGATACATCCATATTTGGACAAATTCGAGTCACTTGGGACCGAGGGAGTATATGATTATTCTCATCCATAAACATTGGCATACCGTCAAACTATAATCACAACACAACCACCTTATTCTCAAAAGGCAGGAGCATAGTAGCATACATCTTTTTTATTCAAATACCATCTAACAAACAAGCACACTCCTGATCGAGTGACTAAGTCTTCATATTCCATGCTGCGCCTCTTGTTTATCCTTGGTGACATATTCACTCAATCCCAAGACGCTTCTTTGTTTGATCAAGCAGAAATTGTGGTTCCAGTTTGGTCTGTGTATACGCATCGATCTTGTTTGCTTCCTCGATGTATTTCTGAAAGTTCGGTCTGCCCTTGGTGATATCGTAGTTCTTGATACCAGAATAGAATATCTGAAACCTTTCAATAAATGGAAGATATGCAATGTCCACCGAACTGAACTGGCCAAGCAAGAAAGGACCATCGGTGAACTTTCCCAGGGCAGCTTCTATTTTATCCAGCGCGGCAACAGTTTCCTCTGACACATCTCCCTTGGAGAGTATGGATGAGTATAATGCTTTGTTAAACTCATCTGTATACGCAAGTAGCTCCTCAGCGGACTGCTTCTTTGCAGAATCTTCAGGAAGCAAAGCTGGGCTTCGAAATTGCTATCATGTACTTGACCAAATCCAAG 5 0 5' arm Brachypodium_distachyon mirnest MIR1122 1e-29 bdi-MIR5183 0.000000002 -40.7 ...........((((((((((.((((((.....((((((.(((((....(((((((((.((.........)).)))))))))...))))).((.....))..)))))))))))).)))))))))).......... (-40.7)