mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACAGAAGAGAGTGAGCACA TGCTCACTCCTCTTTCTGTCAGC CCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATATGTATGCCGTCGTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCT ACTACTACTACAAGCAGCACTTAAAACCTTGCGAGGTCTCGGCACTGGGAGGAAGGTACGACTACCCATCCCATCCATCTCCTCTGCTCCAAAAACCGAACACCAAGGGGGAGAGAGAGAGGATGTGGAGAGCCCTTTCTCTCACCACCTCTCCTTTCAATTCCAGTACGGCGGTCGCTCACCGGATCCAAGAAGAAAAACCTCTCCCGTTTCCTCTTGCTGTTCTGAGGTTTTATTTGGGTTTTTCTCGGATTTCTTGGGTGGTTTGCAACCTGTTTGCTGCGTTCTTCGATTGTGCGATCTGTGAAGGAAGGCTAGCTCCTGGTGTTGAGAGGGCCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATATGTATGCCGTCGTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCTCTCCGGAGTTTATCTTGCATCCAGATCCACATATGGGTTTCTAGAGCCAATTCGATTCAATTTCAATCCAGTAGTTCTATTTTTTTTTTCTCGTAGAAAAAAAGGTTAAACCCTGCTTGGTAGAGGGAAATTCAAGCCACAAAAGACAGGAGGACAAGCATGCGGCAAGTACTCTGGCTTTTCTTTCACTTTACCATGGCACTTCTTATCTCTTA 2 2 5' arm Brachypodium_distachyon mirnest mir-156 7e-24 bdi-MIR156c 4e-53 -52 ....(((((.((((((((((.((((((((((.((((..((((..((((((....)))))).)))))))).))))))))))...)))))))))).)))))... (-52)