mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGCCCTGTCCTCCCGCAG GTGGGAGGCCAGTGCACGGCAGG GTGAGTGGGAGGCCAGTGCACGGCAGGGGGAGCTGCAGGGCCGTCGGAGGGGCCCCAGCGTCTGAGCCCTGTCCTCCCGCAGG 5 3 3' arm Pan_troglodytes mirbase 100 ptr-mir-1233-3 6e-36 -41.6 ....((((((((.(((.((....((((....((((..(((((........))))))))).)))).)).))).))))))))... (-41.60)