mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCTGATGATGCTGCAGCGGA CGTGGTGGCAGTTTTGGAGA GGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGCGGACGATGA GTGAGAAGGAACATATTTCGCTTGGGAAGCAATGGAAAATACAGCCATGAACCCAATCCACTACAAGAAACCGCCCCGGCGCAAGACCGAAAACCGCTGAAACGCCGGAGGGGTGAAAAAGGGCACCGGCTTCCTGGTAAAAAATTTACAGTGTTGCTTCACTTTCAGCGGTGGTGGTAGCTTGAAGACGATGATGGAGCCATCGGGTCAAACCGGAATGAGGCCGGTGTGGCGGCGGGGGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGCGGACGATGACGATGATGACGAGAAGAGGGGCAATGGCAGTGTGGGAGGAGGGTGGCTCACCCTCCATGCCCAACTTGGAACACCCCCAATGCCCACCTCTGGCCTCCTGATGTGTTGTTCTCTGGCTGCACCCTCATTATTTAAGAATATGGGGTATGATTGGCCAGGCCAGATTGGTGGATGTTCTGCCAGAAGGGGGTACTGACGATGAGGGAGCGCGGCCAGCTCAGAGGGAGCATCAATCTTGGCTCTCTTCACCTCAGAGCCTTGAAGTGATCCATGGTGGAGTTGCAGGCCATGGCTGTTCTTATCTCTTTTGGGACTCTGGGAAGCAGGTTGAGATATGCTCAAGTTGAGGTCGACATCTGCGCCTTCAGAAGTGACTTCAGTCAACAACTCCCCCTCATATGTGCTAGGCTCAAAGTTGGTCACAGCTTCTCTACCATTGCATTTGATCGCCGCCTTGTCGTAAGCCCTGATGTTCCCAAACAAGAAAGGAAAAAAGGAAGAAAAGAGAGGAGATTCGAGTCGGTACTTCGTCGAATGAAGAAAAAAGCGGACGCGTGGGCGGACGAGTGGGTCGACCCGGGA 5 1 3' arm Brachypodium_distachyon mirnest mir-172 0.00004 bdi-MIR172d 3e-21 -16.1 ..((....((((.((((((..((.(((...))).))...)))))).))))....)). (-16.1)