mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGAAGCAGGGCACGTGCA CATGTGTTCTTCTCCTCCATC GCTCAGCGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATGCAACTAGAGCTTAGCTAGTGTCAATTCTTCCATCTCTTGTGCCTGGCCGGGATCGATCTTATATACCGAGCGTAATTTGGCACCTATTGGATGCTGCATGCATGTGTTCTTCTCCTCCATCACGGTCTTCATTTCTCTC GGTTCCCAACTTCCGACTCTCTCCTCTCCGTAGCTTCTCTCTTCTTTTGGGAACGAGGTATAAAAAGGGGAAGGGATTTCTTCTGCCTCCTCTTGGCCATTCATTCATGCTCGGATAGTCTGATGAGGACCGTCTCACAGCTAAAGAGAGGAGAGCTCAGCGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATGCAACTAGAGCTTAGCTAGTGTCAATTCTTCCATCTCTTGTGCCTGGCCGGGATCGATCTTATATACCGAGCGTAATTTGGCACCTATTGGATGCTGCATGCATGTGTTCTTCTCCTCCATCACGGTCTTCATTTCTCTCGCTTTCTTTACCGTGTGCGTGCTGGTCGATGATCCAAGAGACCACAAAGATCTTCGGTGCCCTGGTCGGATTCGCTGCTTTACATTTTCTTGCTCTGGCACGCATTACTTTGAGCAGCAGCACACGCATGCAGACGGCAGAATTAACATCCACGGAACTTTTTGGAGAGTAAAGAACACCATATATAGGGCCGTCAGCTTGCCTTCAGTTTGCAAATGCTCGATGCCATCCGCTGCCCAGGCCTTGGCGCAGCTCCTCAGATTGGAGAAGATCAAGACGCAGTGGCATGTTCAGAGGGGCTTCAGAATTCAACCATCCTTGTGAAA 2 0 5' arm Brachypodium_distachyon mirnest MIR164 0.000000000003 bdi-MIR164b 3e-101 -61.9 .......(((((((((((...(((((.((.((((((((((((((((.((((((((.......))))).........((((......(((((..(((((...............))).)).......)))))....))))))))))))))))))))))).)).)))))...))))))....))))).. (-61.9)