mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCCCATAAAT TTATGGAACGGAGGGACTACC CACTCTGCATTACTCCCTCCGTCCCATAAATATTGGCACGGTTTTAAACTAGAGCTAGTTCAAAACCACGCCAATCTTTATGGAACGGAGGGACTACCTTTTTTT TGAAGCAAGCCACGGTATATTAGCATTAGCATGGAGATGGATGCTTTCTTCGAGTGACTTCCTCTCCGGTGTTCCAGCACAGCATTTGTGGTCTCCTGTTCCCAGTAGTGATGAACAATTCCTCAATTCCAATAGCATCCAAGTTTGTTCCGATGATCAATAAATGTCACTCTGCATTACTCCCTCCGTCCCATAAATATTGGCACGGTTTTAAACTAGAGCTAGTTCAAAACCACGCCAATCTTTATGGAACGGAGGGACTACCTTTTTTTTTTTACCTTGTGCTGTTTATGACTCATATGGATCTTGAGATTCCAATACATCAGGTGCTTTGGGGATTCC 3 0 5' arm Brachypodium_distachyon mirnest MIR1122 1e-16 bdi-MIR5174 6e-21 -43.8 ..........((.(((((((((.(((((((.((((((..((((((.(((((....))))).))))))..)))))).))))))).))))))))).))......... (-43.8)