mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTACTCCCTCCGTTCCATA AGGAACAGAGGTAATAGTAAC AAGAGATTAACTACTACTCCCTCCGTTCCATAATATAGGACGATTTGGCAAACTAATTTAGTTTACCAAAACATCTTACATTAAGGAACAGAGGTAATAGTAACTAGCAAAT GTACCAAACTTCCAACCGATTATATAATAATATGGAACTTGCAACATCATCTTCTTATCAATGTGCTTCCAAATTAAGATACATTTAGCATTATGGACGCTAGTGATAAGAGATTAACTACTACTCCCTCCGTTCCATAATATAGGACGATTTGGCAAACTAATTTAGTTTACCAAAACATCTTACATTAAGGAACAGAGGTAATAGTAACTAGCAAATATATGGATTTCTGACCATATACCACCCATCTACAATCTTATCCATTGTAGTCATAGTCCCCAACATCAAACCTGTCCTGAGGGAAGAAGGCAGCAGCGATGACCTTCCCGCCATACCATATCCCATCCAACCACCTCCTGCACCAGGCTGCGTCGGCGAGGTGCGTGTACTCCAGAAACACTTTCCCGACTCCGGCCACCACGGAAGCAGCCCCGCTGCCTTCGATGCCAGGTCCAGGCTGCGGGATCACCACCTTCACTAGGTCGCCGTACTTGCGTGCCTCTTCCGTGACATTCTCCAGAAAGTGCTGGTAGAATCTGTCGTCCTCAAGGCGGTCGCTCGGGGAGAGCATCTTGGTCAGGCATACAACCTTGGTGCCCCCTTTTTCATCGTCGTGAAGCAGCACCGGAGATCGTTGACGACCACGCTTGCTAAAACGGTGGTAGAATCCGTCATCCTCGAGGCTGTCGAGCATCTTGGCCCCTTCGTCATCGTCGTCATGCGGCG 5 0 5' arm Brachypodium_distachyon mirnest MIR1122 0.000006 tae-MIR1137 0.00002 -29.9 ((....))...(((((...((((.(((((.((((.(((((...(((((.((((((...)))))).)))))...))))).)))).))))).))))...))))).......... (-29.9)