mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTGGCTTTCTTGCAAGTTG ACTTGCTGGGAAGACGCAAGT GATTCGCATGCGGCGGCACCAAGCATGAGGCGACAACTGCATTACTTGCTGGGAAGACGCAAGTATGACAGCGAGACATGCATTACTTGCGGGAAAGGCGCAAAACGAATAGAAGATCATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGA GACTGCCCTCGCGTCGTCATTCCCCCGGCTTTTCCTAATCCCCCACTTGGGGCCGAGGGTTCTGGACCGATCCCGATCCTTCTAGACTCTTCGCCGCCCCCTTCTTAAAGCCAGCGGCGCCCGCGGAACGGCAGTAGTAGTAGTACCATTCAGCTGTTTGTTGAAACCATTGGCTGGCTGGTGGCTCGGAGTGGTGACTCGCGGAGGATTCGAGTGATTCGCATGCGGCGGCACCAAGCATGAGGCGACAACTGCATTACTTGCTGGGAAGACGCAAGTATGACAGCGAGACATGCATTACTTGCGGGAAAGGCGCAAAACGAATAGAAGATCATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTGTCAGCAAAACAGAAAGTTTTGTCAGTTTCCTTCAACTATGAATTATACTCCCTCTGTCCAACAAAAGATGTCTCAAGTTTGTCAAAATTTGGATGTATCTAGACATGACTTAGTGTATAGATGCATTCAAATTTAGTCAAAGTTGAGACATCCTTTGTTGGACGGAGGGAGCATTAGAAAATAATCGAGAAAGGAATGGCAATCTGTTAGTGAAAACCTATAACTACTACTCCCTCTGATCCAAAATAAGTGTCTCAGTTTTGAACTAAGCCTAGTTCAAGTCTAGTTCAAAACTGCGACACTTATTTTGGGATCAGAGGTAGTAGAATAACTGCATTAT 3 0 3' arm Brachypodium_distachyon mirnest MIR444 4e-36 tae-MIR444 6e-47 -78.8 .....(((...((.((((.(((((.(((((((.(((((((((.((((((.((((((.(((((((((((..(((.....((((.....)))).......))).....((........)).))))))))))).)))))).)))))).))))))))).))))))).))))).)))).))...))).... (-78.8)