mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTTCCT GGAGAAGAAGAAAGAAAGA GGATCTATCAGTACTCCTCATCCTCTTCCTCTTCCTCTTCCTTTGCAGCCATGGTGGATTCTTGAGGTCGGGAGGGGATCGATTTGGGGGCGAGCGTTGTCTGTTGTGTGAGCCAGCTGGGGAGAAGAAGAAAGAAAGAGGAGGGGATCGAATTTAA ATCAAATCCTTGTATGGCAGGAGATTATCACTGGAGCTGGGCATACAAGTGCCGTTGATTGGTGGGCGCTAGGTACACACATAAATACTAGTACTACTACTCTTCCACCAACAATGGGTTTTATCATATGTATTGTATTACACGGTGATCATCACATCATCGATGCTGCCTAACGAAGTCGATATTTGGTTCAACAGGGATTCTTCTGTATGAAATGCTGTACGGGTACACACCCTTCAGAGGGAAAACCAGGCAAAGGACCTTTGCCAACATCCTGCACAAGGACATCAGATTCCCTATGATGTCAAGTAATACCTATGGCCGTATGTATTCAGCCACGTACGTACGCGTGCATCGCCGTCGCTCCATACGATGTTCCCGGGCGGCGGGCGATGGATTACTCTTTTGCCTGGATCTATCAGTACTCCTCATCCTCTTCCTCTTCCTCTTCCTTTGCAGCCATGGTGGATTCTTGAGGTCGGGAGGGGATCGATTTGGGGGCGAGCGTTGTCTGTTGTGTGAGCCAGCTGGGGAGAAGAAGAAAGAAAGAGGAGGGGATCGAATTTAACTGCAGCTGCAGCTAGCTAGGTGGTCGATCTGACTTACGTTAAAGTCCGGTCCCCCG 3 2 5' arm Brachypodium_distachyon mirnest 7SK 0.00004 mtr-MIR2673b 0.0001 -45.9 .(((((.......((((((....((((..(((((.(((((((..((..((..(((.(((((((..........))))))).)))..))(((..(((..........)))..))).)).))))))).)))))))))..)))))).)))))........ (-45.9)