mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAATTATTGTACATCAGATGAG CATCTGATCTACAATATTTTCT GTTCCAGACACATCTCATCTGATCTACAATATTTTCTTAAATTGTATAAAGAGAAATTATTGTACATCAGATGAGCTGTGTCTGGGAT 2 0 3' arm Pongo_pygmaeus mirbase mir-944 7e-33 hsa-mir-944 4e-40 -46.3 ((((((((((((.((((((((((.(((((((.((((((............)))))).))))))).)))))))))).)))))))))))) (-46.30)