mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCATTCTTTCATTGGCTGG AACCAATAAGAGGATGCCATTTA GGCTGGAAAGGAAGAAGCATTCTTTCATTGGCTGGTGTGTATTGCCTTGTCAACCAATAAGAGGATGCCATTTATCCTTTTCTGACTAGCT 3 2 5' arm Pongo_pygmaeus mirbase 100 hsa-mir-1179 3e-44 -29.4 ((((((((((((.((((((((((((.(((((.((..(..........)..)).))))).)))))))))..))).)))))).....)))))) (-29.40)