mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGCCCTTTCCTCCCGCAG GTGGGAGACCAGGGCACGGCAGGGGGAGCTGCAGG GTGAGTGGGAGACCAGGGCACGGCAGGGGGAGCTGCAGGGCTGTGGGAGGGGCCCCAGCGTCTGAGCCCTTTCCTCCCGCAG 6 15 3' arm Pongo_pygmaeus mirbase 100 hsa-mir-1233-1 3e-34 -40.4 ....(((((((...(((((.((((.......))))((((((((.(((.....))))))).)))).)))))...))))))).. (-40.40)