mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAGTAGTCTGCACATTGGTT CCAGTGTTCAGACTACCTGTTC TAGAAGCGTCCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGAAAGCGGCGAAATG 3 1 3' arm Ornithorhynchus_anatinus mirbase mir-199 1e-50 tgu-mir-199-2 1e-56 -46.2 ......((.(((....((((((((.(((...(((((((.((((((((.(((.(((.......)))....))))))))))).)))))))...))).)))).))))....)))))..... (-46.20)