mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGTATGAGGAGCCAAGCATA TGCCTGGCTCCCTGTATGCCA GAGTATAAGTATATGCCTGGCTCCCTGTATGCCATTTCCAGAGCCCACCAGTATCACCGGTGACCTCCGTGAATGGCGTATGAGGAGCCAAGCATATTCCCCATCT CAAACCATCCAGACAATAAGCTTCAGAAGAGAAAAGCCACCTTCCCTTTACAACCCCTTAATAACAACAATAGTAAACTTCAAGCCAGAACCACCACACACCAGCCACCACCACCCACCTTCACTCCCTTTAGATGAGAGAAAGTGCGTGTCTATGTGTGATTACACCCTCTCTCTCTATATGTTTCAGTATCTATATATATGTAGCATGCAAGCTAAATGGTGTTCATTATCTTGTGAAGCTTTAACCCCACATCCTTTTTTTATTCCTATCTTCTTGTGTTTCATCTCAAAACCACTTTCTGTTCATCTTTTGCCATTTCTTGAACCCCTTTTTCATTGCAAATATATAAAGTTTCAATCTTGATTTGATTTACTACCAAATCTGGCATTCACATCCCACAACTTGGAATCATCCTCTTTGATGTATCATATTTTTTCAAGGTTCTTTTTGAGGTAAAAAGTACATCTNAATACGTGTAGATATATATAGATACATAGATGAGTATAAGTATATGCCTGGCTCCCTGTATGCCATTTCCAGAGCCCACCAGTATCACCGGTGACCTCCGTGAATGGCGTATGAGGAGCCAAGCATATTCCCCATCTTGTTTTTTTGTATAAGAGACTCANAACCTGATTTTTTGTCCTTAACTAGCANTTTAAGAAAGTGATATGTGTAGTTTTTTAGATTTATTATATC 2 0 3' arm Helianthus_annuus mirnest mir-160 1e-16 vvi-MIR160e 2e-21 -40.4 ((........((((((.(((((((.((((((((((((...(((..((((.((...)).))))..)))...)))))))))))).))))))).))))))......)). (-40.4)