mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCGGAATATACCGACGGAAT TCCGTCGGAATATTCCGAGGA TGGGTTTCCTCGAAATTTCCTCGGAATATACCGACGGAATTCCGAGGAAATATCAATCCGTCGGAATATTCCGAGGAAATTCCGAGGAAAAAT CATAGAAAACTAAACGTTGTATGCAATTGACAAGTAATATCGAAATTTAGTCCTTGAGACAATCAGAAGTCTCAAAGTCCATCTGGTCATCTTTAGCAATGTCGGAATCATTATCAGCCTCATATCCGGAATCATGAACCATGTAAGCCTCCGGGTTCTTATTCTTCAGAATTTCTTGGTAGAGCTCACATAAGTGCTTAGAGGTTCTGCAATTCTTGGCCCAATGGTTGCCCATTCCACATCTGTGACAAACGGATTTGGTCGAGTAAGACGGTTTGGATATGCCGCCTCGACCACGTCCATAACTGCCTCGGTCACAGCCATAGTTGGAACCGCGACCACGGTTATTGTGGCTTCCTTTCCGGCCGGTCGAGTAGTTGTCTCGGCTGTACGAGTAATCACTACAAGAAAACATCGGTATTCTGACGGACATTCCGACAGAAAATGAAATCCTCGGAATTTCCCGAGGAATTTCTAAGGAAATTCAGAGGAAACCCAAAATTTGGGTTTCCTCGAAATTTCCTCGGAATATACCGACGGAATTCCGAGGAAATATCAATCCGTCGGAATATTCCGAGGAAATTCCGAGGAAAAATGTGTTCCTCGGAAAAGACCGATGAATTCCGAGGAAATAGTATAAGGATTTTACAAAATTCCGAGGAAATTCCGACGAACTAGTGATCGATCGATGCGTTTTTGGACATATACCCATCGATCGATAACA 3 0 5' arm Brassica_napus mirnest 100 100 -47.6 ....((((((((.((((((((((((((((.((((((((..................)))))))).)))))))))))))))).))))))))... (-47.6)