mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTTCA GGGGTGGTGGTGTAGATGTCC AAGTGGAAGCTGGGGGTGGTGGTGTAGATGTCCATGGAACCACTTGATTTTCTTCATCATCATCATCATCATCATCTTCAGCCACACCA TATTTCCTATGTGTTGTNNNACTGTTCTTTAGTCGAGAATTTAAGNNNTATATAATTCTTTAAGGCAAACTTTTATTACATAAATTCTCGAAATAAAACTCTAATTCTGATTAGAAAACAGCAGGAACAACACCTAAAAAACTGTATCGAAGTTTTATCCATCACGATATTGGAATTATTAATCGGAGCCACCTTCTTCAACATCAGAGAACCTGGTAGAACTAGTTGTAACACTATTTGAAGAAGTGGAAGCTGGGGGTGGTGGTGTAGATGTCCATGGAACCACTTGATTTTCTTCATCATCATCATCATCATCATCTTCAGCCACACCACCATCGTCGTTTTCTGCATGATCCTCTCCCGTACCATCATCATCATCGTCTTCATGATTCTGTTGGCTGCAGGTCTCAGTACTATTGTTGTTGACACAAGTGTTGCAAACTGACATGGTGGGTACAAACTTGGGTCCTGTGCCGTGCCACGCTGTTAGTGATTGACAAACATGGCAGAGAAGAATCCTGGGATGTTTGGTGACGAGGAAGTTTGCACTGTGAACCTTAGCATCGCATTTCCAACAGAGGCTGGCTTGATCTGATTCGCAGAACAACTTCGCGGGACTGTTACAGAGCTCACACTTCCTCATCTCAACCTTAAATTATTTTGTTTTCTCTCCCTTCTTGTTATGGCCACACCACAGGCTAGATACCATATATTAAATTGTGAACAAAAAAAAATATGGTGTAGGCAAGTTGCAAGTTATTGAAATTCTCTCTTGCTTTGTCTTTCATCACAGATTTTTCCTCGTGC 3 0 3' arm Glycine_max mirnest 100 100 -29.1 ..(((...((((((((((((((((..((((...(((((..............)))))...))))..))))))))))))))))..))).. (-29.1)