mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACATACTTCTTTACATTCCA GGTACATAAAGAAGTATGTGCT TTCCTTTAGCTTCTTCTTGGCGGACATTACCTACCCAAAATACATACTTCTTTACATTCCATAGCACTGAATGTTCATATGGGTACATAAAGAAGTATGTGCTCTGAGTAGGCACTCCTGCG 3 1 5' arm Mus_musculus mirbase mir-1 4e-26 mmu-mir-1b 5e-65 -35.2 ...................((((......(((((.((.(.((((((((((((((...((((((..((.....))...))))))....)))))))))))))).).)).))))).....)))). (-35.20)