mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTTTGCCGGAGCTGGAGGCC CCTCGCTCCTCCAAACGTC AACTCTATCTGGCCTCGCTCCTCCAAACGTCGCCGTGAAGTCCTGCGGGTGCTTGGGGCGGTGCGGTGGCGGTCCCAATCTGGTGGTCCTGCCTGATGGCCTCATCGTTGGCCATTGCGGGACGGCTGCTCGGGCGGCGGAGGTCATAGCGACTCTGTTTGCCGGAGCTGGAGGCCATGACCCAA ATTCCACGTGGTAGTGCTAGGGAAGAAGCAGTAAGCACTGAGCTTGAAGTAATAGATGGACAGCAGTCGCAATTTCTTGCTTAGTTCTCATGTGGCGCCATCCCCACCCGTCAAAGTCAAAGCACAGGAAATTCGGGTATGCACCAACCGCACCTGCCGCAGACAGGGCTCATTTCAAACCCTAGAAACTCTATCTGGCCTCGCTCCTCCAAACGTCGCCGTGAAGTCCTGCGGGTGCTTGGGGCGGTGCGGTGGCGGTCCCAATCTGGTGGTCCTGCCTGATGGCCTCATCGTTGGCCATTGCGGGACGGCTGCTCGGGCGGCGGAGGTCATAGCGACTCTGTTTGCCGGAGCTGGAGGCCATGACCCAAAGACTTGTTTAGATGCGCTTGCTTTGAGGAAGAGAGCGGAGATTGAGTTTGCCAAGCGAAACTTCACTGAGGCTGAGCTTCTACTCTCACAGGTCATTTGTAAGGCTGGAATTGGGCAACTACTCTGGTGCCCTCGAAGATGCTGAAGAGGCTTTGGCATTGGCTCCCGGTTATTCTGAGGCTTATATCTGCCAAGGTGATGCCTTTTTGGCATTGAACAAATTTGATTTGGCAGAGCAGTCATATTCAGCATCCTTAGTTATAGATCCTTCGATTCGTCATTCTAAATCATTCAAGGCTCGGATAGCAAAACTTCAGGAAAAACTTGCTGCTGTCAAAACACTGTGAGATCTAGAT 3 2 3' arm Glycine_max mirnest 100 100 -76.3 .......((((((((((((((..((((((((((.((((..(((.((.((...(((((((..(((....)))))))))).)).)).(((((((..(((((((........)))))))))))))).(((((....))))))))..)))).)))))...)))))..)))))..))))))).))..... (-76.3)