mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCGTCGTCT AGATGATGATGACTTGAGA CTTCATCATCATCATCGTCATCATCGTCGTCTTCATCTTCCTCTTCCTCCTCGAGTGACGATGAATCATATGTAAAGGAGGTAGTTGGAGATAATAGAGATGATGATGACTTGAGAAAGGCCAG ATCTTCATCATCATCATCGTCATCATCGTCGTCTTCATCTTCCTCTTCCTCCTCGAGTGACGATGAATCATATGTAAAGGAGGTAGTTGGAGATAATAGAGATGATGATGACTTGAGAAAGGCCAGTTCACCAATCAAGAGAGTTTCTTTAGTGGAAAGGAAGGCTTTGGTAAGGTATAAGAGGTCTGGTTCTAGCTTAACCAAGCCTAGAGAAAGAGACAACAAGATTCAGAAACTAAACCACCGAGAAGAAGAAAAAAAAGAACGACAAAGAGAAGTTGTAAGAGTAGTAACAAAGCAGCCGAGCAATGTTGTGTACACTTGTGCTCACTGTGGCAAAGAGAACACAGGAAACCCTGAATCACACAGCTCTTTCATTAGACCACATTCAATAAGAGATGAAATTGAGGATGTGAACAACTTTGCTTCTACTAATGTATCAAAGTATGAAGATTCTGTTTCCATCAACTCTGGGAAAACAACTGGAGCTCCATCCAGACCTGAAGTGGAGAATCCAGAGACAGGAAAAGAATTGAACACACCTGAGAAGCCATCCATATCCAGACCTGAAATTTTCACTACAGAGAAAGCGATAGATGTACAAGTACCTGAAGAGCCATCAAGACCTGAAATTTACAGTTCAGAGAAAGCAAAAGAGGTACAAGCACCTGAAATGCCATCAAGACCTGAAG 1 2 5' arm Arabidopsis_thaliana mirnest 100 100 -38.1 ........((.(((..((((((((((((.(((..((((((..((.((((((((.((((.......)))).))...)))))).))..))))))...))))))))))))))).)))))........ (-38.1)