mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACCATCAATTCATCGTGGCCG GCCATGATAAGCTTTGTGGATGT TTTTCCATAGCACCATCAATTCATCGTGGCCGATGTGCTTAGGACGGCCATGATAAGCTTTGTGGATGTAGTAC CCAGATATTCATTTATTCACTCACACAGCAAGAGAGTAGTTCAGTGTATCATGCAACTTAAAAGCATACAAAATATCACGAATAGAGAAATATTGATAAACCAAACTGTTATTGAGGTCTGATTTCTGAAAGCTTTAATATGTCCAAGGAAAATCAAATGGGAATGAAAGTACTAGATCCCCCAGCTTCTTCTTCTTCTGGAATGCACCTTTATTTGTCACCACAAGTGGTCACCTTAAGCCCCTGAGGAACACAAAAGAGATAAAGCGAATCATGAGGAAGGAGCTGCAGCTTCTCGACGACTTCTTGTCGCGTTTTCCATAGCACCATCAATTCATCGTGGCCGATGTGCTTAGGACGGCCATGATAAGCTTTGTGGATGTAGTACTGAGAATTGCCATGATACAGAGCATCCACCGATGATTCG 2 2 5' arm Arabidopsis_thaliana mirnest 100 ath-MIR835 0.0002 -20.1 .........(((((((.((((.((((((((((............)))))))))).)).)).)))).)))..... (-20.1)