mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTTTTGCGGTCTGGGCTTGC CGGAAGCCCTTACCCCAAAAAGCA TGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCG 3 3 5' arm Mus_musculus mirbase mir-129 4e-28 mmu-mir-129-2 4e-46 -48.2 .((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))). (-48.20)