mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGATGACGCCGGAGAGAA TTCTCCGTCTCCGTCTCCGTC CTCCGGTGATGCATACTTGGTTTTCTCCGTCTCCGTCTCCGTCTGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATGGGGAGGAATAGCGACGACGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCCGTAT TCTGTATTCTCTTATCAGACAAAAAGTCCAAGATTTTTCTAATAGCGATGGATTGTGTGGAATCTTATTAATCCGGAGATAATTCTGATGAATCTCCGGTGATGCATACTTGGTTTTCTCCGTCTCCGTCTCCGTCTGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATGGGGAGGAATAGCGACGACGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCCGTATAAAGGTCCTCTTGAAATGATGGAATCTCTCGAACAAGTCTTACCTGTTAGGAAAGGGATATCGAAGTATTACAGTGGAAAGTCAAAGTCTTTTACTAATTCAACGGCGGAGGCAGCTTCGGCGTTGACTTCTTC 4 0 3' arm Arabidopsis_thaliana mirnest 100 100 -56.9 ...(((.(((.((.((((.((((((((((....((((((((.(((..((((((..(((((..((.((.((.(((..(((((((....))))))).))))).)).)).)))))......)))))))))))))))))....)))))))))).)))))).))).)))... (-56.9)