mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATATAACCAAAGCCTGACTAT AGTCAGGCTTCTGGCTATATTCCA CAGTCAGGCTTCTGGCTATATTCCAGGACTTACCTGGTCCTGGATATAACCAAAGCCTGACTATAT 3 2 3' arm Mus_musculus mirbase mir-344 3e-28 rno-mir-344b-1 1e-17 -38.6 .((((((((((.(((.(((((.((((((((.....))))))))))))).))))))))))))).... (-38.60)