mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTTAC GAGAGATGAAGATCTGACA CTTCAACAATGTCATCATCATCATCATCTTACTTGAGAGATGAAGATCTGACACAAGAAAC CCCACGCGTCCGCCCACGCGTCCGATAGTTTCTAAAAAAAATCAAGATTAATCTATACTCTTCAACAATGTCATCATCATCATCATCTTACTTGAGAGATGAAGATCTGACACAAGAAACAAGAGATCTGATCTCTTCTCTTCCAAGCGAGAAAGGTTGGTTGGTGAGCCAAATGTATCAGTTTCAAGGACGTTGGCACACACAAGCCCTCTTACAAGGACTCTTGCAATACCAAAAACACTTTGAGGCCAAAGATTCCGACATTATCCTCGTCACCAATCCTAAATCAGGTACCACTTGGTTAAAAGCTCTTGTCTTTTCTCTCATTAACCGACACAAGTTTCCAGTTTCTTCTGGTGATCATCCTCTTCTTGTTACCAATCCGCACCTTCTCATACCCTTCTTGGAAGGAGTTTACTACGAGTCTCCAAATTTCGATTTCACTGAGTTGCCTTCTCCAAGACTCATGAACACACACATATCGCTTCTTTCCCTGCCCGAGTCCGTTAAGAGCTCCTCTTGTAAGATTGTGTATTGTTGTAGGAACCCTAAGGACATGTTTGTGTCCTTATGGCATTTTGGAAAGAAACTTGCTTCTCAAGAAACTGCTGATTATCCTATTGAAAAAGCGGTTGAAGCGTTTTGTCAAGGGAAGTTTATAGGTGGACCCTTTTGGGATCATGTGCTGGAGTACTGGTATGCCAGCCTTGAGAATCCGAACAAGGTCTTATTTGTTACATACGAGGAGCTGAAGAAGCAGACTGGAGATACGATTAAGAGAATAGCCGAATTCTTGGGATGTGGTTTTATTGAAGA 4 2 5' arm Brassica_oleracea_var._alboglabra mirnest 100 100 -14.5 .........(((((..(((.(((((.((((....))))))))).))).)))))........ (-14.5)