mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTGAGAGAGAGAACACAGACG TCTGTTTTCTCTCTTTTAAGAA CTTCAAACCATTTTCGAAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGCTATAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGGGGGGACAAGAAGATACAAGAATAAAAAGTCTGTTTTCTCTCTTTTAAGAAACCACTTACTTCGAAAAT TCTCTTCAAACCATTTTCGAAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGCTATAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGGGGGGACAAGAAGATACAAGAATAAAAAGTCTGTTTTCTCTCTTTTAAGAAACCACTTACTTCGAAAATGGCTCGTTCTATCTCTAACGTTAAGATCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAATGCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCGCAAGGGAGCGTCCGAGCGGTGGAAGAAGTGGAGCTGTGGCTTCGGCTGTGATGAACAAGAAGGGAGTGGAAGAATCAACCCCAGAAGATTTCTTGGGTTCCAGATCCAAA 2 0 5' arm Arabidopsis_thaliana mirnest 100 ath-MIR2936 2e-74 -45.6 .........(((((((((((.((((((((((((((.((((((...........(((((..((((....((((((.......(((((........)))))...........))))))..))))...)))))..............)))))).))))))))))))))......))...))))))))) (-45.6)