mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCTCCGACCTCCTCCGAGAA CTCGGAGTCTCGTCGGAGAG TTTCTCCGACCTCCTCCGAGAAACCCATCTCTCCTCCTCCATTTTTGCCCTTGGAGTTTCATCAGCAAGTTTCTCGGAGTCTCGTCGGAGAG TTTCTCCGACCTCCTCCGAGAAACCCATCTCTCCTCCTCCATTTTTGCCCTTGGAGTTTCATCAGCAAGTTTCTCGGAGTCTCGTCGGAGAGATCGGAGTTTTTTTTTTTTTTTTTTTTCCTGGATCTGNCGACTATGTGATGGGAATCCAATAACAGAGAACGCANAGAGAGTGTTTTCGGATGGGGATTTGCTTTAGCGCTGAANATCAGCACTACCAATTTT 4 1 5' arm Arabidopsis_thaliana mirnest 100 100 -32.5 ..((((((((...(((((((((((............(((((..........)))))............)))))))))))....)))))))). (-32.5)