mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTGTTTGGTTGCTGAGAAAA TTCTCGGTGACCAGATTCCGATA ATTATTTCATTTCTGTTTGGTTGCTGAGAAAACGGTGGAAAATTTTCTGAATTTTTCTTTCTCGGTGACCAGATTCCGATATTTTTG GAAGACAGGTAAACACGATCTCTCTCCTCTCCTTCTATTTCTCCTCTCTTCTCTGTCTTTTCTCTCTTTTTTTTTTTTTTAATAAACTTTCCATCTTTCTTTTTATTATTTCATTTCTGTTTGGTTGCTGAGAAAACGGTGGAAAATTTTCTGAATTTTTCTTTCTCGGTGACCAGATTCCGATATTTTTGACGAGTTTTATTGATTTAAGTTCTTGAATTACAATCAAGATCCATGGCGGAAGAGCATCGATGTCAAACGCCGGAAGGCCACCGTCTCTGTGCTAACAACTGCGGCTTCCTCGGCAGCTCCGCAACCATGAATCTATGCTCCAACTGCTACGGCGATCTCTGTCTTAAACAACAGCAACAAGGCCCATCCTCTCTCTCCGCCGTATCTCCTCCGTCGCCGGTGATCACTTCCATCTCTACTCCGATGATCCAGCCTCTCGTTCAAAACCCATCTGCTGAACTGGAGGTACCGGCGAAGAACGTGTCGGTGAACGGTAACGGGCGACGGAGCAGCCGCAGAAGCGGCCGAACCGGTGTACCACGTGCAGGAAAAGGGTCGGGTTGACCG 2 2 5' arm Brassica_rapa mirnest 100 vvi-MIR3629b 0.001 -24.3 ...........((.(((((((((((((((((.....(((((((((...))))))))))))))))))))))))))...))........ (-24.3)