mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGAAAACTCTGAAGCTGGC TAAGCTGGAGTCTTCTTTTC GTGAGCGGGCGAGTGATAAGCTGGAGTCTTCTTTTCTTCCTTGTGCTCAAGTGTCTGGTTGAGTGCGGAATGGAGAAAACTCTGAAGCTGGCAATCGAGTATGTA ACTGAATAGATTAAAAGAAATCCGGATTGCAAAATGTGAATAACAAAGTGTCTGCGGAATAAAACTTAGATAAACGAAAATGTAAAATACATGCTACTTATAGCGAAATATTCCAAAACCCTAACACTCAAAACGACGCAATAGTGGGACGGATTAAGAACGGTACTCGACCCAGGGGGGCGAGTGAGCGGGCGAGTGATAAGCTGGAGTCTTCTTTTCTTCCTTGTGCTCAAGTGTCTGGTTGAGTGCGGAATGGAGAAAACTCTGAAGCTGGCAATCGAGTATGTAGTCGAGTGATGGTGATGGTGATACTCGACTTTGTGGTAAAGTGGCGTGATCAAGGGATGGTCAAGTGGTGGAGGTGATGATACTCGACCAGGTGGTCGAGTGAAGTGATCGAGTGACTCTCATGGTGGTACTCGGCCAGGCGGTCGAGTGGTGAACTGAAGTAGTGAATTCTTCTACTCGACCAGGGGGTCGAGTGGTCTATTGAGGTCGTGAAGCGTC 3 2 3' arm Arabidopsis_thaliana mirnest 100 100 -33.3 ....(((..(((.((...(((((((((.((((((..((((..((((((((........)))))))))))).)))))).)))))..))))..)).)))....))). (-33.3)