mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCGACCAGGGGGTCGAGT TCGACCTCGTGGTCGAGTGGT GTGAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTTTTGAGATCTTGAAGCTCCTACTCGACCTCGTGGTCGAGTGGTTTGACATGATCATGCC TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTGAATATTGAATACTGAATAGATAAAGAGAAATCCGGATTACAAAAAGTCTAAAACACAAGGTCTGCGGAAATAAAAACTAGGTAAAAACCAACTTGTCTGCGAAAATGAAAAGTACATGCTACTTATAGCCAAATATCCCGAAACCCTAATACTCAAAACGACGAAGTATTGGGACGGATTAAGAACTGTACTCGGCCCATGTGGTCGAGTGGGAGGTCGAGTGAATAGCTGGAGTCTTCTTTTCTTCCTTGTGCTCGAGTGTCTGGTTGAGTGCGGAATGAAGAAGGCTCTGAAGCTTGTCATCGAGTACGCAGTCGAGTGGTGGTGATGGTGATACTCGACTTCTAGGTAGAGTGATGAGGTCGAGTAGTGGTCTGGCAATGAAGGTGAAGACACTCGGCCTCGAGGTCGAGTGATGTGATCGAGTGATGGTCATGTGATGGGATGAAGACACTCGACCTCGGGGTCGAGTGATGTGGTGAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTTTTGAGATCTTGAAGCTCCTACTCGACCTCGTGGTCGAGTGGTTTGACATGATCATGCCCGCATCTTCCAGATAGCTCGTCAACAGCTCCAAATCACCTGAAATCAACGCAAATATGCAACATGCATGCAAATCTATCCTAAACATGTAAAGTGATGACAAATGATGAGAAATGGTATAAAACAGTGATGATATGATGCTAAAGTGATGACAAATGGATGCTCAAAACATGCAAAATACACACTTATCAACTCCCCCAAACTTAGTCTTTGCTTGCCCTCTAGCAAACAATCAAGAACAAGCTGGAGGTGAGGTTTGAAAGCGGGGACTCAGAGCCAAAGCACTAGATAAACCAGATGAAATCAATGTCCAAGTTGAAAGTTCTAAGCTGCAAGATCGAATTCTACTTAAAAACGTTAGCCATGCCTCATTATCAATCAATCCAACTCATATGCTCGACCTACACATGTTTTCAAATCTACCAATCCGTTTAACATTCATTCCTGCTGGAACGTGAATCAAGCAATGCATCATCAATAAACTCATTTGGCTAAGGTAAAAGGTCAAGAGACAAAGATGGTCC 1 0 5' arm Arabidopsis_thaliana mirnest 100 100 -43.2 ........((((((((..(((((((((((.((((((((((((.((((.........)))).))..)))))))))).)))))))))))...))))...))))... (-43.2)