mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGACCTCACGGTCGAGTGAA CACTCGACCTCGGGGTCGAGT TGATGATGGAGGTGAAGACACTCGACCTCACGGTCGAGTGAAGTGATCGAGTGACCGTCTGGTGATGGAGATGATGGCACTCGACCTCGGGGTCGAGTGGTGAGGTGAAGTGGTGA TTTTTTTTTTTTTTTTTTTATTGAATACTGAATAGATAAAGAGAAATCCGGATTACAAAAAGTCTAGAACACAAGGTCTGCGGAAATAAAAACTAGGTAAAAAACTACTCCTCTCGAAAATGAGAAGTACATGCTACTTATAGCCAAATATCCCGAAACCCTAATACTCAAAACGACGAAGTATTTGGACGGGTTAAGAACTGTACTCGACCAACGTGGTCGAGTGAGAGCTCGGGTGAATAGCTGGAGTCTTCTTTTCTTCCTTGTGCTCGAGTGTCTGGTTGAGTGCAGAATGAAGAAGGCTCTGAAGCTTGTCATCGAGTATGCAGTCGAGTGGTGTGATGGAGATACTCGACCTCTAGGTAGAGTGAGGAGGTCGAGTGGTTGTCTGATGATGGAGGTGAAGACACTCGACCTCACGGTCGAGTGAAGTGATCGAGTGACCGTCTGGTGATGGAGATGATGGCACTCGACCTCGGGGTCGAGTGGTGAGGTGAAGTGGTGATGTGCTCTACTCGACCTGGTTGTCGAGTGGTCTCTTGAGATCTTGAAGCTCCTACTCGACCTCTGGGTCGAGTGGTTTGTCATGATCAGGTCTGCTTCTTCCAGATAGCTCGTCAACAGCTCCAAATCACCTGAAATCAACGCAAATATGCAACATGCATGCAAAACTATCCTAAACATGCAAAGTGATGACAAATGATGTGAAATGGTATAAAACAGTGATGATATGATGCTAAAGTGATGACAAATGGATGCTCAAAACATGCAAAATACACACTTATCAACTCCCCCAAACTTAGTCTTTGCTTGCCCTCAAGCAAAACAAAAGGTTGA 4 0 5' arm Arabidopsis_thaliana mirnest 100 100 -42.5 ..................(((((((((((..(((((((((..((.(((..((.(((....))).))...))).))..)))))))))..)))))))))))................. (-42.5)