mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTATAAAGCAATGAGACTGATT TCCGTCTCAGTTACTTTATAGCC CACTTGTACTCGGTGTGATTATAAAGCAATGAGACTGATTGTCATGTGTCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCCATACCTGGTATCTTA 5 1 5' arm Rattus_norvegicus mirbase mir-340 1e-40 rno-mir-340 8e-51 -32.8 .....(((((.((((((..(((((((...((((((.((((.(((((.......))))))))).))))))....)))))))..)))))).))))).... (-32.80)