mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATCCTTGGAACCTAGGTGTGAAT CACACCTGTTCAAGGATTCA CTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAA 2 3 5' arm Rattus_norvegicus mirbase mir-500 9e-19 mmu-mir-362 2e-31 -29.3 ...(((((((((((...((((((((..(((.((....))))).)))))))))))))))))))... (-29.30)