mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATATCAGCTCAGTAGGCACCG GTTCCTGCTGAACTGAGCCAG GCTTTTTGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATCACAGCTGGGCAGTGC 5 1 3' arm Rattus_norvegicus mirbase mir-24 2e-24 mmu-mir-3074-1 6e-43 -48.52 ((...(((((((.(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))).........))))))).)) (-48.52)